Basic Science Co-Director
James & Jean Culver Vision Discovery Institute
Office: Carl T. Sanders Research and Education Building, CB1123
Phone: 706-721-2015
Lab: 706-721-4843
yutliu@augusta.edu
EducationSelected Honors & AwardsResearch Goals & ApproachesMembersPublications & News/Media Coverage
1990-1995 MD Beijing Medical University, Beijing, China
1999-2001 MS Truman State University, Kirksville, MO, USA
2001-2006 PhD University of Tennessee, Knoxville, TN, USA
2006-2010 Postdoctoral Associate, Duke University Medical Center, Durham NC, USA
The Thomas R. Lee Award for National Glaucoma Research, American Health Assistance Foundation, Clarksburg, MA
Annual Educator Award, Division of Medical Genetics, Department of Medicine, Duke University School of Medicine
The long term goal of our laboratory is to dissect age-related genetic diseases (glaucoma and keratoconus) using systematic approaches, including human genetics/epigenetics, functional genomics, and molecular/cellular biology. Our lab has extensive research experience in the area of human genetics, bioinformatics, and functional genomics using several model systems, including human samples, in vitro cell/tissue culture and mouse models. Our research has been published in over 100 peer-reviewed articles, including Nature Genetics, PLoS Genetics, AJHG, PNAS, HMG, IOVS, EER, and Molecular Vision. Our research has been supported by a variety of different organizations, including the National Eye Institute at the National Institute of Health, several private foundations (The Glaucoma Foundation - TGF, the Glaucoma Research Foundation – GRF, the American Health Assistance Foundation – AHAF or BrightFocus, and RPB), and institutional supports.
Our current research is focused on understanding the molecular mechanisms and pathogenesis of two vision-related disorders: keratoconus (KC) and glaucoma. KC, a progressive thinning of the cornea, is the most common corneal ectasia, affecting one in every 500 to 2000 Americans. KC causes moderate to severe astigmatism, nearsightedness, swelling and cornea scarring. It is necessary for 10-20% KC patients to have cornea transplants. Using whole exome and whole genome sequencing, we have identified novel mutations in multiplex KC families. We are characterizing these mutations using primary human corneal cells and transgenic mouse models. We have research collaborations with investigators from California, Iowa, Illinois, Saudi Arabia, Israel, and Duke University in North Carolina. Glaucoma is the leading cause of irreversible blindness worldwide, affecting over 60 million people. It is characterized as a progressive loss of retinal ganglion cells and visual field.
Dr. Liu is a Co-Investigator of the NEIGHBORHOOD glaucoma genetics consortium.
Our lab has been involved in the identification of several glaucoma-associated genes, including but not limited to LOXL1, CDKN2B-AS1, SIX6, GALC, and chr8q22 locus. We are currently using primary human trabecular meshwork cells and other cells under cyclic mechanical stretch to determine their cellular functions in glaucoma. We are also interested in characterizing how the exosomes and its content – miRNA/proteins are involved in the pathogenesis of glaucoma and keratoconus. We have extensive experience in working with exosomes with > 30 peer-reviewed publications since 2013. Our team is highly motivated, cordial, collaborative, and trainee-friendly.
Approaches
We are using a number of advanced cutting-edge technologies, including whole exome/genome sequencing, Total RNA-Seq, small RNA-Seq, genome-wide DNA genotyping/gene expression, realtime PCR, droplet digital PCR, and nanoparticle tracking analysis (NTA) with ZetaView for exosomes and other nanoparticles. Bioinformatics is an important part of our research. We use a number of different bioinformatics tools in our daily research. We also use available mouse models to study both glaucoma and keratoconus by characterizing their ocular phenotypes.
Publication |
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​ Identification of Keratoconus-Related Phenotypes in Three Ppip5k2 Mouse ModelsAkoto, T., Hadvina, R., Jones, S., Cai, J., Yu, H., McCord, H., Jin, C. X. J., Estes, A. J., Gan, L., Kuo, A., Smith, S. B. & Liu, Y., Jun 2024, In: Investigative Ophthalmology and Visual Science. 65, 6, 22.Research output: Contribution to journal › Article › peer-review |
​ Evaluation of Novel Nasal Mucoadhesive Nanoformulations Containing Lipid-Soluble EGCG for Long COVID TreatmentFrank, N., Dickinson, D., Lovett, G., Liu, Y., Yu, H., Cai, J., Yao, B., Jiang, X. & Hsu, S., Jun 2024, In: Pharmaceutics. 16, 6, 791.Research output: Contribution to journal › Article › peer-review |
​ The impact of ischemic stroke on bone marrow microenvironment and extracellular vesicles: A study on inflammatory and molecular changesPatel, S., Khan, M. B., Kumar, S., Vyavahare, S., Mendhe, B., Lee, T. J., Cai, J., Isales, C. M., Liu, Y., Hess, D. C. & Fulzele, S., Sep 2024, In: Experimental Neurology. 379, 114867.Research output: Contribution to journal › Article › peer-review |
​ Oral Microbially-Induced Small Extracellular Vesicles Cross the Blood-Brain BarrierElashiry, M., Carroll, A., Yuan, J., Liu, Y., Hamrick, M., Cutler, C. W., Wang, Q. & Elsayed, R., Apr 20 2024, In: International journal of molecular sciences. 25, 8Research output: Contribution to journal › Article › peer-review |
​ Animal Models for the Study of KeratoconusHadvina, R., Estes, A. & Liu, Y., Dec 2023, In: Cells. 12, 23, 2681.Research output: Contribution to journal › Review article › peer-review |
​ Feasibility Study of Developing a Saline-Based Antiviral Nanoformulation Containing Lipid-Soluble EGCG: A Potential Nasal Drug to Treat Long COVIDFrank, N., Dickinson, D., Garcia, W., Liu, Y., Yu, H., Cai, J., Patel, S., Yao, B., Jiang, X. & Hsu, S., Feb 2024, In: Viruses. 16, 2, 196.Research output: Contribution to journal › Article › peer-review |
​ Mechanosensitive ion channel gene survey suggests potential roles in primary open angle glaucomaNEIGHBORHOOD Consortium, Dec 2023, In: Scientific reports. 13, 1, 15871.Research output: Contribution to journal › Article › peer-review |
​ Homocysteine and GlaucomaWashington, J., Ritch, R. & Liu, Y., Jul 2023, In: International journal of molecular sciences. 24, 13, 10790.Research output: Contribution to journal › Review article › peer-review |
​ Electrical Stimulation Increases the Secretion of Cardioprotective Extracellular Vesicles from Cardiac Mesenchymal Stem CellsZhang, H., Shen, Y., Kim, I.-M., Liu, Y., Cai, J., Berman, A. E., Nilsson, K. R., Weintraub, N. L. & Tang, Y., Mar 2023, In: Cells. 12, 6, 875.Research output: Contribution to journal › Article › peer-review |
​ Defining the ligand-dependent proximatome of the sigma 1 receptorZhao, J., Veeranan-Karmegam, R., Baker, F. C., Mysona, B. A., Bagchi, P., Liu, Y., Smith, S. B., Gonsalvez, G. B. & Bollinger, K. E., 2023, In: Frontiers in Cell and Developmental Biology. 11, 1045759.Research output: Contribution to journal › Article › peer-review |
​ The genetics of primary open-angle glaucoma: A reviewAllingham, R. R. & Liu, Y., Jan 1 2010, Encyclopedia of the Eye. Elsevier, p. 217-221 5 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter |
​ Exosomes and their miRNA/protein profile in keratoconus-derived corneal stromal cellsHadvina, R., Lotfy Khaled, M., Akoto, T., Zhi, W., Karamichos, D. & Liu, Y., Nov 2023, In: Experimental eye research. 236, 109642.Research output: Contribution to journal › Article › peer-review |
​ Estrogen dysregulation, intraocular pressure, and glaucoma riskYoungblood, H., Schoenlein, P. V., Pasquale, L. R., Stamer, W. D. & Liu, Y., Dec 2023, In: Experimental eye research. 237, 109725.Research output: Contribution to journal › Review article › peer-review |
​ Genetic Correlations Among Corneal Biophysical Parameters and Anthropometric TraitsCousins, H. C., Cousins, C. C., Valluru, G., Altman, R. B., Liu, Y., Pasquale, L. R. & Ahmad, S., Aug 1 2023, In: Translational Vision Science and Technology. 12, 8, 8.Research output: Contribution to journal › Article › peer-review |
​ Glaucomatous aqueous humor vesicles are smaller and differ in composition compared to controlsMueller, A., Anter, A., Edwards, G., Junk, A. K., Liu, Y., Ziebarth, N. & Bhattacharya, S. K., Sep 2023, In: Experimental eye research. 234, 109562.Research output: Contribution to journal › Article › peer-review |
​ Mitochondrial TXNRD2 and ME3 Genetic Risk Scores Are Associated with Specific Primary Open-Angle Glaucoma PhenotypesNEIGHBORHOOD Consortium, Jul 2023, In: Ophthalmology. 130, 7, p. 756-763 8 p.Research output: Contribution to journal › Article › peer-review |
​ Transcriptome Analysis of Retinal and Choroidal Pathologies in Aged BALB/c Mice Following Systemic Neonatal Murine Cytomegalovirus InfectionZhang, X., Xu, J., Marshall, B., Dong, Z., Liu, Y., Espinosa-Heidmann, D. G. & Zhang, M., Mar 2023, In: International journal of molecular sciences. 24, 5, 4322.Research output: Contribution to journal › Article › peer-review |
​ Potential underlying genetic associations between keratoconus and diabetes mellitusAtes, K. M., Estes, A. J. & Liu, Y., Nov 2021, In: Advances in Ophthalmology Practice and Research. 1, 1, 100005.Research output: Contribution to journal › Review article › peer-review |
​ Engineered Human Dendritic Cell Exosomes as Effective Delivery System for Immune ModulationElsayed, R., Elashiry, M., Tran, C., Yang, T., Carroll, A., Liu, Y., Hamrick, M. & Cutler, C. W., Jul 2023, In: International journal of molecular sciences. 24, 14, 11306.Research output: Contribution to journal › Article › peer-review |
​ Microbially-Induced Exosomes from Dendritic Cells Promote Paracrine Immune Senescence: Novel Mechanism of Bone Degenerative Disease in MiceElsayed, R., Elashiry, M., Liu, Y., Morandini, A. C., El-Awady, A., Elashiry, M. M., Hamrick, M. & Cutler, C. W., Feb 1 2023, In: Aging and Disease. 14, 1, p. 136-151 16 p.Research output: Contribution to journal › Article › peer-review |
​ Unravelling the Impact of Cyclic Mechanical Stretch in Keratoconus—A Transcriptomic Profiling StudyAkoto, T., Cai, J., Nicholas, S., McCord, H., Estes, A. J., Xu, H., Karamichos, D. & Liu, Y., Apr 2023, In: International journal of molecular sciences. 24, 8, 7437.Research output: Contribution to journal › Article › peer-review |
​ Clinical and molecular aspects of congenital aniridia - A review of current conceptsTibrewal, S., Ratna, R., Gour, A., Agarkar, S., Dubey, S., Ganesh, S., Kekunnaya, R., Sangwan, V., Liu, Y. & Vanita, V., Jul 2022, In: Indian Journal of Ophthalmology. 70, 7, p. 2280-2292 13 p.Research output: Contribution to journal › Review article › peer-review |
​ Revealing the presence of tear extracellular vesicles in KeratoconusHefley, B. S., Deighan, C., Vasini, B., Khan, A., Hjortdal, J., Riaz, K. M., Liu, Y. & Karamichos, D., Nov 2022, In: Experimental eye research. 224, 109242.Research output: Contribution to journal › Article › peer-review |
​ Nebulization of extracellular vesicles: A promising small RNA delivery approach for lung diseasesHan, Y., Zhu, Y., Youngblood, H. A., Almuntashiri, S., Jones, T. W., Wang, X., Liu, Y., Somanath, P. R. & Zhang, D., Dec 2022, In: Journal of Controlled Release. 352, p. 556-569 14 p.Research output: Contribution to journal › Article › peer-review |
​ The Underlying Relationship between Keratoconus and Down SyndromeAkoto, T., Li, J. J., Estes, A. J., Karamichos, D. & Liu, Y., Sep 2022, In: International journal of molecular sciences. 23, 18, 10796.Research output: Contribution to journal › Review article › peer-review |
​ Identification of circulating microvesicle-encapsulated miR-223 as a potential novel biomarker for ARDSAlmuntashiri, S., Han, Y., Youngblood, H. A., Chase, A., Zhu, Y., Wang, X., Linder, D. F., Siddiqui, B., Sikora, A., Liu, Y. & Zhang, D., Nov 2022, In: Physiological reports. 10, 21, e15494.Research output: Contribution to journal › Article › peer-review |
​ Blunted rest-activity circadian rhythm is associated with increased rate of biological aging: an analysis of NHANES 2011-2014Xu, Y., Wang, X., Belsky, D. W., McCall, W. V., Liu, Y. & Su, S., Sep 18 2022, In: The journals of gerontology. Series A, Biological sciences and medical sciences.Research output: Contribution to journal › Article › peer-review |
​ Consensus Recommendation for Mouse Models of Ocular Hypertension to Study Aqueous Humor Outflow and Its MechanismsMcDowell, C. M., Kizhatil, K., Elliott, M. H., Overby, D. R., van Batenburg-Sherwood, J., Cameron Millar, J., Kuehn, M. H., Zode, G., Acott, T. S., Anderson, M. G., Bhattacharya, S. K., Bertrand, J. A., Borras, T., Bovenkamp, D. E., Cheng, L., Danias, J., De Ieso, M. L., Du, Y., Faralli, J. A. & Fuchshofer, R. & 60 others, , Feb 2022, In: Investigative Ophthalmology and Visual Science. 63, 2, 12.Research output: Contribution to journal › Article › peer-review |
​ The role of microRNAs in glaucomaGreene, K. M., Stamer, W. D. & Liu, Y., Feb 2022, In: Experimental eye research. 215, 108909.Research output: Contribution to journal › Review article › peer-review |
​ Genetics of keratoconusKhaled, M. L. & Liu, Y., Jan 1 2019, Genetics and Genomics of Eye Disease: Advancing to Precision Medicine. Elsevier, p. 219-235 17 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter |
​ Encapsulating Cas9 into extracellular vesicles by protein myristoylationWhitley, J. A., Kim, S., Lou, L., Ye, C., Alsaidan, O. A., Sulejmani, E., Cai, J., Desrochers, E. G., Beharry, Z., Rickman, C. B., Klingeborn, M., Liu, Y., Xie, Z. R. & Cai, H., Apr 2022, In: Journal of Extracellular Vesicles. 11, 4, e12196.Research output: Contribution to journal › Article › peer-review |
​ Polymorphism rs13334190 in zinc finger protein 469 (ZNF469) is not a risk factor for keratoconus in a Saudi cohortKalantan, H., Kondkar, A. A., Sultan, T., Azad, T. A., Alsabaani, N. A., Alqahtani, M. A., Almummar, A., Liu, Y. & Abu-Amero, K. K., Nov 29 2017, In: BMC Research Notes. 10, 1, 652.Research output: Contribution to journal › Article › peer-review |
​ Genetics of primary open-angle glaucomaYoungblood, H. & Liu, Y., Jan 1 2019, Genetics and Genomics of Eye Disease: Advancing to Precision Medicine. Elsevier, p. 181-201 21 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter |
​ Very long-chain C24:1 ceramide is increased in serum extracellular vesicles with aging and can induce senescence in bone-derived mesenchymal stem cellsKhayrullin, A., Krishnan, P., Martinez-Nater, L., Mendhe, B., Fulzele, S., Liu, Y., Mattison, J. A. & Hamrick, M. W., Jan 1 2019, In: Cells. 8, 1, 37.Research output: Contribution to journal › Article › peer-review |
​ Exercise improves angiogenic function of circulating exosomes in type 2 diabetes: Role of exosomal SOD3Abdelsaid, K., Sudhahar, V., Harris, R. A., Das, A., Youn, S. W., Liu, Y., McMenamin, M., Hou, Y., Fulton, D., Hamrick, M. W., Tang, Y., Fukai, T. & Ushio-Fukai, M., Mar 2022, In: FASEB Journal. 36, 3, e22177.Research output: Contribution to journal › Article › peer-review |
​ Hindlimb Immobilization Increases IL-1β and Cdkn2a Expression in Skeletal Muscle Fibro-Adipogenic Progenitor Cells: A Link Between Senescence and Muscle Disuse AtrophyParker, E., Khayrullin, A., Kent, A., Mendhe, B., Youssef El Baradie, K. B., Yu, K., Pihkala, J., Liu, Y., McGee-Lawrence, M., Johnson, M., Chen, J. & Hamrick, M., Jan 3 2022, In: Frontiers in Cell and Developmental Biology. 9, 790437.Research output: Contribution to journal › Article › peer-review |
​ FOXO1-Mediated Downregulation of RAB27B Leads to Decreased Exosome Secretion in Diabetic KidneysZeng, M., Wen, J., Ma, Z., Xiao, L., Liu, Y., Kwon, S., Liu, Y. & Dong, Z., 2021, In: Diabetes. 70, 7, p. 1536-1548 13 p.Research output: Contribution to journal › Article › peer-review |
​ Identification of estrogen signaling in a prioritization study of intraocular pressure-associated genesYoungblood, H. A., Parker, E., Cai, J., Perkumas, K., Yu, H., Sun, J., Smith, S. B., Bollinger, K. E., Wiggs, J. L., Pasquale, L. R., Hauser, M. A., Stamer, W. D. & Liu, Y., Oct 1 2021, In: International journal of molecular sciences. 22, 19, 10288.Research output: Contribution to journal › Article › peer-review |
​ Porphyromonas gingivalis Provokes Exosome Secretion and Paracrine Immune Senescence in Bystander Dendritic CellsElsayed, R., Elashiry, M., Liu, Y., El-Awady, A., Hamrick, M. & Cutler, C. W., Jun 1 2021, In: Frontiers in cellular and infection microbiology. 11, 669989.Research output: Contribution to journal › Article › peer-review |
​ Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestriesUK Biobank Eye and Vision Consortium, GIGA study group, 23 and Me Research Team, NEIGHBORHOOD Consortium, ANZRAG consortium, Biobank Japan project & FinnGen study, Dec 1 2021, In: Nature communications. 12, 1, 1258.Research output: Contribution to journal › Article › peer-review |
​ A novel 3D culture model of fungal keratitis to explore host-pathogen interactions within the stromal environmentBrown, M. E., Montgomery, M. L., Kamath, M. M., Nicholas, S., Liu, Y., Karamichos, D. & Fuller, K. K., Jun 2021, In: Experimental eye research. 207, 108581.Research output: Contribution to journal › Article › peer-review |
​ Proteomic Characterization, Biodistribution, and Functional Studies of Immune-Therapeutic Exosomes: Implications for Inflammatory Lung DiseasesElashiry, M., Elsayed, R., Elashiry, M. M., Rashid, M. H., Ara, R., Arbab, A. S., Elawady, A. R., Hamrick, M., Liu, Y., Zhi, W., Lucas, R., Vazquez, J. & Cutler, C. W., Mar 25 2021, In: Frontiers in immunology. 12, 636222.Research output: Contribution to journal › Article › peer-review |
​ Generation of Novel Diagnostic and Therapeutic Exosomes to Detect and Deplete Protumorigenic M2 MacrophagesRashid, M. H., Borin, T. F., Ara, R., Alptekin, A., Liu, Y. & Arbab, A. S., Jul 1 2020, In: Advanced Therapeutics. 3, 7, 1900209.Research output: Contribution to journal › Article › peer-review |
​ Critical immunosuppressive effect of MDSC-derived exosomes in the tumor microenvironmentRashid, M. H., Borin, T. F., Ara, R., Piranlioglu, R., Achyut, B. R., Korkaya, H., Liu, Y. & Arbab, A. S., Mar 2021, In: Oncology Reports. 45, 3, p. 1171-1181 11 p.Research output: Contribution to journal › Article › peer-review |
​ Sex-specific differences in extracellular vesicle protein cargo in synovial fluid of patients with osteoarthritisKolhe, R., Owens, V., Sharma, A., Lee, T. J., Zhi, W., Ghilzai, U., Mondal, A. K., Liu, Y., Isales, C. M., Hamrick, M. W., Hunter, M. & Fulzele, S., Dec 2020, In: Life. 10, 12, p. 1-13 13 p., 337.Research output: Contribution to journal › Article › peer-review |
​ Optimal timing for activation of sigma 1 receptor in the Pde6brd10/J (rd10) mouse model of retinitis pigmentosaWang, J., Xiao, H., Barwick, S., Liu, Y. & Smith, S. B., Jan 2021, In: Experimental eye research. 202, 108397.Research output: Contribution to journal › Article › peer-review |
​ Decreased secretion and profibrotic activity of tubular exosomes in diabetic kidney diseaseWen, J., Ma, Z., Livingston, M. J., Zhang, W., Yuan, Y., Guo, C., Liu, Y., Fu, P. & Dong, Z., Oct 2020, In: American Journal of Physiology - Renal Physiology. 319, 4, p. F664-F673Research output: Contribution to journal › Article › peer-review |
​ An in vitro bovine cellular model for human schlemm’s canal endothelial cells and their response to tgfβ treatmentCai, J., Perkumas, K., Daniel Stamer, W. & Liu, Y., 2020, In: Translational Vision Science and Technology. 9, 7, p. 1-14 14 p., 32.Research output: Contribution to journal › Article › peer-review |
​ Differential dna methylation patterns in human schlemm’s canal endothelial cells with glaucomaCai, J., Drewry, M. D., Perkumas, K., Dismuke, W. M., Hauser, M. A., Stamer, W. D. & Liu, Y., 2020, In: Molecular Vision. 26, p. 483-493 11 p.Research output: Contribution to journal › Article › peer-review |
For a detailed list of recent publications, please refer to NCBI My Bibliography
*** Please note that some of the listed publications were included as the NEI P30-supported studies but not as a co-author since Dr. Liu is the PI of the P30 grant. These should be treated as P30-supported publications ONLY.